GWAS-related eQTLs across different cancer types
We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).
|
Cancer type
|
eQTL type
|
tagSNP
|
Gene position (hg19)
|
p-value
|
|||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| THCA | cis | rs12196860 | 1 | rs62404867 | chr6:55957970 | COL21A1 | chr6:55921389-56258892:- | -0.65 | -8.07 | 5.8E-15 | Psychosis (atypical) |
| THCA | cis | rs12196860 | 1 | rs62404868 | chr6:55958119 | COL21A1 | chr6:55921389-56258892:- | -0.65 | -8.07 | 5.8E-15 | Psychosis (atypical) |
| THCA | cis | rs12196860 | 1 | rs62404869 | chr6:55958205 | COL21A1 | chr6:55921389-56258892:- | -0.65 | -8.07 | 5.8E-15 | Psychosis (atypical) |
| THCA | cis | rs12196860 | 1 | rs62404893 | chr6:55961216 | COL21A1 | chr6:55921389-56258892:- | -0.65 | -8.07 | 5.8E-15 | Psychosis (atypical) |
| THCA | cis | rs12196860 | 1 | rs62404894 | chr6:55961287 | COL21A1 | chr6:55921389-56258892:- | -0.65 | -8.07 | 5.8E-15 | Psychosis (atypical) |
| THCA | cis | rs12196860 | 1 | rs62404895 | chr6:55961427 | COL21A1 | chr6:55921389-56258892:- | -0.65 | -8.07 | 5.8E-15 | Psychosis (atypical) |
| THCA | cis | rs12196860 | 1 | rs62404896 | chr6:55962092 | COL21A1 | chr6:55921389-56258892:- | -0.65 | -8.06 | 5.95E-15 | Psychosis (atypical) |
| THCA | cis | rs12196860 | 1 | rs62406152 | chr6:55932036 | COL21A1 | chr6:55921389-56258892:- | -0.63 | -7.81 | 3.68E-14 | Psychosis (atypical) |
| THCA | cis | rs12196860 | 1 | rs62406153 | chr6:55935232 | COL21A1 | chr6:55921389-56258892:- | -0.64 | -7.91 | 1.86E-14 | Psychosis (atypical) |
| THCA | cis | rs12196860 | 1 | rs62406155 | chr6:55937492 | COL21A1 | chr6:55921389-56258892:- | -0.65 | -8.03 | 7.92E-15 | Psychosis (atypical) |
| THCA | cis | rs12196860 | 1 | rs62406156 | chr6:55941887 | COL21A1 | chr6:55921389-56258892:- | -0.65 | -8.07 | 5.8E-15 | Psychosis (atypical) |
| THCA | cis | rs12196860 | 1 | rs62406157 | chr6:55941999 | COL21A1 | chr6:55921389-56258892:- | -0.65 | -8.11 | 4.22E-15 | Psychosis (atypical) |
| THCA | cis | rs9346353 | 1 | rs62408999 | chr6:70472660 | LMBRD1 | chr6:70385751-70506888:- | -0.1 | -3.43 | 0.00066 | Sleep duration |
| THCA | cis | rs12196860 | 1 | rs62411452 | chr6:55964425 | COL21A1 | chr6:55921389-56258892:- | -0.65 | -8.07 | 5.8E-15 | Psychosis (atypical) |
| THCA | cis | rs12196860 | 1 | rs62411455 | chr6:55968366 | COL21A1 | chr6:55921389-56258892:- | -0.65 | -8.07 | 5.8E-15 | Psychosis (atypical) |